Programas instalados en los servidores del CCG y de la LCG
| Nombre | Descripción corta |
|---|---|
| ABySS | Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler |
| Admixture | ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets. |
| Adobe Acrobat 9 Standard | |
| Alien_Hunter | Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). |
| AMOS | A Modular, Open-Source whole genome assembler |
| ANGSD | ANGSD: Analysis of next generation Sequencing Data. |
| Annocript | Annocript is a pipeline for the annotation of de-novo generated transcriptomes. |
| Artemis | Visualización y anotación de genomas. |
| Bcftools | BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. BCFtools are meant as a faster replacement for most of the perl VCFtools commands. |
| bcl2fastq | The bcl2fastq Conversion Software v1.8.4 software can be used to convert BCL files from MiSeq and HiSeq sequencing systems running RTA versions earlier than 1.8. |
| BEAST | BEAST, Bayesian Evolutionary Analysis Sampling Trees, is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. |
| Bedtools | bedtools: a powerful toolset for genome arithmetic |
| BIOBASE | Bases de datos de regulación, señales de transducción y vias metabólicas. |
| Bioconductor | Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. |
| BioPerl | Perl code which is useful in biology. |
