Programas instalados en los servidores del CCG y de la LCG


ÁreaSistema Operativo
NombreDescripción corta
MAFFT

Multiple alignment program for amino acid or nucleotide sequences.

MAMMOTH

MAMMOTH: Matching Molecular Models Obtained from Theory

Maq

Maq stands for Mapping and Assembly with Quality. It builds assembly by mapping short reads to reference sequences.

MaSuRCA

MaSuRCA is whole genome assembly software.

Mauve

Mauve is a system for constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion.

MEME/MAST

Descubre motivos(regiones altamente conservadas) en grupos de DNA relacionados o proteinas de secuencias

Metaxa2

Metaxa2: Improved Identification and Taxonomic Classification of Small and Large Subunit rRNA in Metagenomic Data

Mfinder

Network motifs detection tool.

Migrate-N

Estimation of population sizes and gene flow using the coalescent

MIRA

Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Solexa (Illumina), IonTorrent data and PacBio (at the moment only CCS and error-corrected CLR reads).

Documentation on http://mira-assembler.sourceforge.net/docs/DefinitiveGuideToMIRA.html

Modeller

Program for Comparative Protein Structure Modelling by Satisfaction of Spatial Restraints

Mothur

The one-stop source for your computational microbial ecology needs.

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MrBayes

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models.

MUMmer

Ultra-fast alignment of large-scale DNA and protein sequences.