Programas instalados en los servidores del CCG y de la LCG
| Nombre | Descripción corta |
|---|---|
| GMAP/GSNAP | GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences. |
| GS Data Analysis Software (Newbler) | The GS Data Analysis Software package includes the tools to investigate complex genomic variation in samples including de novo assembly, reference guided alignment and variant calling, and low abundance variant identification and quantification. |
| HMMER | Busca patrones en secuencias usando descripciones estadísticas |
| HOMER | Software for motif discovery and next generation sequencing analysis. |
| IGV | IGV: Integrative Genomics Viewer |
| IMAGE | IMAGE: Iterative Mapping and Assembly for Gap Elimination. |
| IMPUTE | |
| InterProScan | InterProScan is the software package that allows sequences (protein and nucleic) to be scanned against InterPro's signatures. |
| ISQuest | Predictor de secuencias de inserción a partir de contigs y reads. |
| jModelTest | jModelTest is a tool to carry out statistical selection of best-fit models of nucleotide substitution. |
| Jmol | Jmol: an open-source Java viewer for chemical structures in 3D |
| KaSim | Command line stochastic simulator for kappa models. |
| Lamarc | Estimation of recombination rate, migration rate, effective population sizes and exponential growth rates |
| LAST | LAST finds similar regions between sequences. |
| MACS | Model-based Analysis of ChIP-Seq. |
