Programas instalados en los servidores del CCG y de la LCG
| Nombre | Descripción corta |
|---|---|
| Muscle | Popular multiple alignment software. |
| MySQL | Base de datos relacional. |
| NAMD | NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. |
| ngsDist | ngsDist is a program to estimate pairwise genetic distances directly, taking the uncertainty of genotype's assignation into account. It does so by avoiding genotype calling and using genotype likelihoods or posterior probabilities. |
| PAML | PAML: Phylogenetic Analysis by Maximum Likelihood. |
| PanOCT | PanOCT: Automated Clustering of Orthologs using Conserved Gene Neighborhood for Pan-Genomic Analysis of Bacterial Strains and Closely Related Species. |
| Parallel-META | Parallel-META is a software toolkit which can perform rapid data mining among massive microbial community data for comparative taxonomical and functional analysis. |
| PEAR | PEAR: a fast and accurate Illumina Paired-End reAd mergeR |
| Phi Test | The Phi Test is a simple, rapid, and statistically efficient test for recombination. Its performance is comparable with coalescent based methods like LDHat, and yet it can be applied to large alignments with hundreds of sequences. |
| Phobius | A combined transmembrane topology and signal peptide predictor. |
| Phrap | Ensambla fracciones de secuencias de tipo "shotgun". |
| Phred | Asigna valor de calidad a bases obtenidas del secuenciador. |
| PHYLIP | Deducir filogenias. |
| PHYML | Implementa un metodo nuevo para construir phylogenias de DNA |
| Picard | A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. |
