MIRA

Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Solexa (Illumina), IonTorrent data and PacBio (at the moment only CCS and error-corrected CLR reads).

Documentation on http://mira-assembler.sourceforge.net/docs/DefinitiveGuideToMIRA.html