Samtools


Descripción corta: 

Samtools is a suite of programs for interacting with high-throughput sequencing data.

It consists of three separate repositories:

  • Samtools: Reading/writing/editing/indexing/viewing SAM/BAM/CRAM format
  • BCFtools: Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants
  • HTSlib: A C library for reading/writing high-throughput sequencing data